EBI Metagenomics documentation¶
Contents:
- About
- Data flow from submission to results
- Analysis pipeline v4.1
- Website and portal
- Content of the ‘Associated runs’ table on project page
- Finding quality control information about runs on the EBI Metagenomics website
- Finding functional information about runs on the EBI Metagenomics website
- Finding taxonomic information about runs on the EBI Metagenomics website
- Files available to download on the EBI Metagenomics website
- Summary files
- Comparison tool
- Data discovery on EBI Metagenomics portal
- Landing page
- Result page
- Build process
- Partial and full length peptides
- Availability
- Further information
- Privat area
- RESTful API
- Sequence search
- Guides and Tutorials
- FAQs
- What kind of sequence data does the service accept?
- Can I submit assembled metagenomic sequences for analysis?
- Can I submit 18S rRNA or ITS amplicon sequences?
- Can I submit viral sequences?
- How do I run a BLAST search against the metagenomics datasets?
- Can I change the release date of my project?
- How long will it take for my data to be analyzed?
- I have submitted my data - how do I trigger the analysis?
- Do you have an API?
- How can I download several sets of data?
- How can I bulk download metadata?
- How can I re-analyse my data with a different version of the pipeline?
- Can I request that a dataset is analyzed if I am not the original submitter?
- Can I request my data to not be analyzed by EBI Metagenomics?
- Can I compare the taxonomic assignments between runs of a project?
- Can I know which bacteria encodes particular pCDS in my dataset?
- Glossary